Variant report

Variant	rs10845397
Chromosome Location	chr12:11784575-11784576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:11783936..11786293-chr12:11800798..11803656,2	MCF-7	breast:
2	chr12:11783439..11785151-chr12:11787291..11788805,2	K562	blood:
3	chr12:11774248..11776994-chr12:11784131..11786795,2	K562	blood:

Variant related genes	Relation type
ENSG00000139083	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10772491	0.90[EUR][1000 genomes]
rs10772492	0.89[EUR][1000 genomes]
rs10845389	0.93[EUR][1000 genomes]
rs10845390	0.86[EUR][1000 genomes]
rs10845391	0.86[EUR][1000 genomes]
rs10845394	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10845396	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11054377	0.85[EUR][1000 genomes]
rs11054378	0.94[EUR][1000 genomes]
rs11054379	0.94[EUR][1000 genomes]
rs11054384	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11054385	0.94[CEU][hapmap];0.88[CHB][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11054389	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11054390	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11833870	0.85[EUR][1000 genomes]
rs11835584	0.94[EUR][1000 genomes]
rs12366449	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12368746	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12371924	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4763712	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs58419583	0.86[EUR][1000 genomes]
rs58572989	0.86[EUR][1000 genomes]
rs60345208	0.86[EUR][1000 genomes]
rs6488434	0.86[EUR][1000 genomes]
rs6488437	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6488440	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7132693	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7133901	0.85[EUR][1000 genomes]
rs7311752	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7313110	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7962768	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9668837	0.86[EUR][1000 genomes]
rs9669330	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898803	chr12:11757867-11794636	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv470267	chr12:11767406-11787989	Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11776600-11786400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:11777000-11788200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:11783400-11788200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:11783400-11788600	Weak transcription	Thymus	Thymus
5	chr12:11784000-11784800	Enhancers	Liver	Liver

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