Variant report

Variant	rs10845453
Chromosome Location	chr12:12182165-12182166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10845451	0.96[ASN][1000 genomes]
rs10845452	0.96[ASN][1000 genomes]
rs11054616	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11054619	0.96[ASN][1000 genomes]
rs12146841	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12425503	0.91[EUR][1000 genomes]
rs12426754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28720964	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57170747	0.81[AFR][1000 genomes]
rs59213608	0.96[ASN][1000 genomes]
rs60058224	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61086864	0.84[AFR][1000 genomes]
rs73285715	0.84[AFR][1000 genomes]
rs73285722	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73285733	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898804	chr12:12058411-12202173	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12171200-12185400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr12:12171400-12185200	Weak transcription	Spleen	Spleen
3	chr12:12171800-12185000	Weak transcription	Esophagus	oesophagus
4	chr12:12172200-12184600	Weak transcription	Thymus	Thymus
5	chr12:12175600-12185400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:12178400-12185200	Weak transcription	Small Intestine	intestine
7	chr12:12178400-12185400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:12179000-12184600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr12:12179000-12184600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:12179000-12184800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr12:12179000-12184800	Weak transcription	Fetal Thymus	thymus
12	chr12:12179000-12185200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr12:12179200-12184600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr12:12179200-12185000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr12:12180400-12185800	Weak transcription	Dnd41	blood
16	chr12:12180800-12183000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr12:12180800-12185200	Weak transcription	Adipose Nuclei	Adipose
18	chr12:12181600-12182200	Enhancers	HepG2	liver
19	chr12:12181600-12185200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr12:12181800-12182200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr12:12181800-12183200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr12:12181800-12185200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr12:12182000-12182600	Enhancers	GM12878-XiMat	blood

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