Variant report

Variant	rs12146841
Chromosome Location	chr12:12167522-12167523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10845453	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11054616	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12424479	0.84[AMR][1000 genomes]
rs12425503	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12426754	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60058224	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73060045	0.98[ASN][1000 genomes]
rs73285722	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73285733	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898804	chr12:12058411-12202173	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12163600-12171600	Weak transcription	Gastric	stomach
2	chr12:12163800-12169200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:12163800-12169600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:12163800-12171400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:12164000-12169000	Weak transcription	Adipose Nuclei	Adipose
6	chr12:12164000-12171400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:12164200-12169800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr12:12164200-12171600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:12164400-12168200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr12:12164400-12169400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:12164400-12169400	Weak transcription	Fetal Heart	heart
12	chr12:12164400-12169600	Weak transcription	Brain Anterior Caudate	brain
13	chr12:12164400-12171000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr12:12164400-12171200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr12:12164600-12168200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr12:12164600-12168200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr12:12164600-12168400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr12:12164600-12169200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:12164600-12169200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr12:12164600-12169200	Weak transcription	Lung	lung
21	chr12:12164600-12169200	Weak transcription	Osteobl	bone
22	chr12:12164600-12169400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr12:12164600-12169400	Weak transcription	HMEC	breast
24	chr12:12164600-12169600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr12:12164600-12169600	Weak transcription	NH-A	brain
26	chr12:12164600-12171200	Weak transcription	Right Atrium	heart
27	chr12:12164600-12172600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr12:12164800-12167800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr12:12164800-12168000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr12:12164800-12168200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr12:12164800-12169000	Weak transcription	HSMMtube	muscle
32	chr12:12164800-12169200	Weak transcription	Thymus	Thymus
33	chr12:12164800-12169200	Weak transcription	HSMM	muscle
34	chr12:12164800-12169400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr12:12164800-12169400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr12:12164800-12169400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr12:12164800-12169400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr12:12164800-12169400	Weak transcription	Spleen	Spleen
39	chr12:12164800-12169600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr12:12164800-12169800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr12:12164800-12170200	Weak transcription	Placenta	Placenta
42	chr12:12164800-12170400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr12:12164800-12179800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr12:12165200-12169400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr12:12165200-12169600	Weak transcription	Primary T cells from cord blood	blood
46	chr12:12165400-12169200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr12:12165400-12169400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr12:12165400-12169600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr12:12165400-12170600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr12:12165600-12169400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links