Variant report

Variant	rs10845496
Chromosome Location	chr12:12375694-12375695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11054721	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11054731	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12366664	0.80[AMR][1000 genomes]
rs17819999	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2417085	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4763785	0.81[AMR][1000 genomes]
rs7966410	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv529005	chr12:12254756-12412795	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3427115	chr12:12262415-12432411	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv898806	chr12:12264471-12453808	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1050715	chr12:12293072-12383820	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv832332	chr12:12344027-12484966	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12336200-12381000	Weak transcription	Pancreas	Pancrea
2	chr12:12344200-12377000	Weak transcription	NHDF-Ad	bronchial
3	chr12:12368200-12376200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:12368200-12376200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr12:12368200-12379000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr12:12368200-12381400	Weak transcription	Gastric	stomach
7	chr12:12368200-12384200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:12368400-12417200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:12368600-12381000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:12368600-12381400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:12370600-12380800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr12:12370600-12381000	Weak transcription	Left Ventricle	heart
13	chr12:12370800-12379000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr12:12370800-12380800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:12370800-12392200	Weak transcription	Brain Substantia Nigra	brain
16	chr12:12371200-12376200	Weak transcription	Brain Anterior Caudate	brain
17	chr12:12371800-12378200	Weak transcription	Fetal Muscle Leg	muscle
18	chr12:12372000-12376200	Weak transcription	GM12878-XiMat	blood
19	chr12:12372200-12376800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:12373000-12380800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr12:12373000-12381200	Weak transcription	Lung	lung
22	chr12:12374000-12377800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:12374200-12376600	Weak transcription	K562	blood
24	chr12:12374400-12376000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr12:12374600-12377000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr12:12374600-12381000	Weak transcription	Brain Hippocampus Middle	brain
27	chr12:12374600-12381400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr12:12374800-12380600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr12:12374800-12380600	Weak transcription	Brain Angular Gyrus	brain
30	chr12:12374800-12380800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr12:12374800-12383200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr12:12375000-12376200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr12:12375000-12377000	Weak transcription	HSMM	muscle
34	chr12:12375000-12378200	Weak transcription	Fetal Intestine Large	intestine
35	chr12:12375000-12379200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr12:12375000-12380800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr12:12375200-12376000	Weak transcription	A549	lung
38	chr12:12375200-12379200	Weak transcription	Liver	Liver
39	chr12:12375200-12379400	Weak transcription	Fetal Kidney	kidney
40	chr12:12375400-12376800	Weak transcription	HepG2	liver
41	chr12:12375600-12375800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr12:12375600-12377200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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