Variant report

Variant	rs10846581
Chromosome Location	chr12:124483533-124483534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:124455666..124458954-chr12:124482967..124486459,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270095	Chromatin interaction
ENSG00000178882	Chromatin interaction
ENSG00000119242	Chromatin interaction
ENSG00000179195	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10846582	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12304077	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3493374	chr12:124458433-124496012	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3493363	chr12:124458497-124495976	Strong transcription Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3493385	chr12:124458565-124495928	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1818097	chr12:124465667-124488972	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124461200-124496800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:124469000-124492600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:124470800-124490200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr12:124474400-124490400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr12:124474600-124484800	Weak transcription	Fetal Kidney	kidney
6	chr12:124475400-124488600	Weak transcription	Psoas Muscle	Psoas
7	chr12:124475600-124483600	Weak transcription	Colonic Mucosa	Colon
8	chr12:124475600-124485800	Strong transcription	Primary B cells from cord blood	blood
9	chr12:124476200-124492400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr12:124477400-124484400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:124477400-124484600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr12:124477800-124485800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr12:124477800-124486600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr12:124478000-124485000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr12:124478000-124485000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr12:124478000-124490200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr12:124478200-124484600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr12:124478200-124489400	Enhancers	Fetal Heart	heart
19	chr12:124478400-124485000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr12:124478400-124485000	Weak transcription	Hela-S3	cervix
21	chr12:124478600-124488200	Weak transcription	Colon Smooth Muscle	Colon
22	chr12:124478600-124490200	Strong transcription	HepG2	liver
23	chr12:124479200-124484200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr12:124479400-124483600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr12:124479400-124484000	Enhancers	Right Atrium	heart
26	chr12:124479400-124485000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr12:124479400-124486400	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr12:124479400-124493400	Strong transcription	Dnd41	blood
29	chr12:124479600-124486600	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr12:124479800-124484400	Weak transcription	Pancreas	Pancrea
31	chr12:124479800-124488400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr12:124479800-124493000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr12:124480000-124483600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr12:124480000-124485000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr12:124480200-124489000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr12:124480400-124485000	Genic enhancers	Left Ventricle	heart
37	chr12:124480400-124486800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr12:124480400-124489200	Strong transcription	Fetal Muscle Trunk	muscle
39	chr12:124480600-124483800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr12:124480600-124484800	Weak transcription	NHEK	skin
41	chr12:124480600-124486800	Weak transcription	Stomach Mucosa	stomach
42	chr12:124480600-124487200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr12:124480600-124496200	Weak transcription	Small Intestine	intestine
44	chr12:124480800-124484000	Enhancers	NHLF	lung
45	chr12:124480800-124486800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr12:124481000-124489000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr12:124481000-124490200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr12:124481200-124483800	Strong transcription	Fetal Intestine Small	intestine
49	chr12:124481200-124485600	Weak transcription	HMEC	breast
50	chr12:124481200-124488400	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links