Variant report

Variant	rs10846582
Chromosome Location	chr12:124490030-124490031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10846581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12304077	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3493374	chr12:124458433-124496012	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3493363	chr12:124458497-124495976	Strong transcription Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3493385	chr12:124458565-124495928	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124461200-124496800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:124469000-124492600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:124470800-124490200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr12:124474400-124490400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr12:124476200-124492400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr12:124478000-124490200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr12:124478600-124490200	Strong transcription	HepG2	liver
8	chr12:124479400-124493400	Strong transcription	Dnd41	blood
9	chr12:124479800-124493000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr12:124480600-124496200	Weak transcription	Small Intestine	intestine
11	chr12:124481000-124490200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr12:124481200-124492400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:124481600-124492800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr12:124482200-124490200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:124482200-124490600	Genic enhancers	Fetal Thymus	thymus
16	chr12:124482800-124490200	Strong transcription	Fetal Brain Female	brain
17	chr12:124483200-124492400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr12:124483600-124490200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:124483600-124491600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:124483600-124494800	Weak transcription	HUVEC	blood vessel
21	chr12:124483600-124495000	Weak transcription	NH-A	brain
22	chr12:124483800-124490200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:124483800-124493000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr12:124484400-124498400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr12:124484600-124490200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr12:124485000-124498800	Strong transcription	Hela-S3	cervix
27	chr12:124485600-124490200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr12:124485800-124490200	Weak transcription	Primary B cells from cord blood	blood
29	chr12:124485800-124490200	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr12:124486000-124490200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr12:124486000-124496400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr12:124486200-124491400	Weak transcription	HSMM	muscle
33	chr12:124486400-124496200	Weak transcription	HMEC	breast
34	chr12:124486600-124491400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr12:124486800-124490200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr12:124486800-124490200	Weak transcription	Liver	Liver
37	chr12:124486800-124490400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr12:124486800-124492600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr12:124486800-124496200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr12:124486800-124496200	Weak transcription	NHLF	lung
41	chr12:124487000-124495200	Weak transcription	Osteobl	bone
42	chr12:124487000-124495800	Weak transcription	Ovary	ovary
43	chr12:124487200-124490400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr12:124487200-124495400	Weak transcription	Esophagus	oesophagus
45	chr12:124487400-124490200	Weak transcription	HSMMtube	muscle
46	chr12:124487400-124492400	Weak transcription	Fetal Kidney	kidney
47	chr12:124487600-124490800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr12:124487600-124492400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr12:124487800-124490600	Weak transcription	NHEK	skin
50	chr12:124488200-124490200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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