Variant report

Variant	rs10849121
Chromosome Location	chr12:4811541-4811542
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10744660	0.85[CHB][hapmap]
rs10774265	0.86[ASN][1000 genomes]
rs10849122	0.85[ASN][1000 genomes]
rs10849123	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10849124	0.84[ASN][1000 genomes]
rs10849134	0.81[CHB][hapmap]
rs11063310	0.86[ASN][1000 genomes]
rs11063312	0.84[ASN][1000 genomes]
rs11063319	0.86[CHB][hapmap]
rs11063323	0.90[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs12312983	0.90[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap]
rs12422704	0.90[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap]
rs1860347	0.86[CHB][hapmap]
rs2079776	0.86[ASN][1000 genomes]
rs3782743	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs4766284	0.85[CHB][hapmap]
rs6489562	0.86[ASN][1000 genomes]
rs6489564	0.86[CHB][hapmap]
rs7132150	0.86[CHB][hapmap]
rs7307792	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7311212	0.86[ASN][1000 genomes]
rs7962439	0.86[ASN][1000 genomes]
rs997411	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832318	chr12:4655799-4875837	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4798000-4813400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:4798000-4814200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr12:4798400-4817200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr12:4799400-4812000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:4799600-4826800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr12:4800400-4812200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr12:4800800-4812000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:4804000-4811600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:4804000-4816000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:4804200-4816000	Weak transcription	Liver	Liver
11	chr12:4804200-4817200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr12:4804400-4811800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr12:4806000-4811800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr12:4806600-4817000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:4807400-4823800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:4808600-4811800	Weak transcription	Primary B cells from cord blood	blood
17	chr12:4810000-4812600	Weak transcription	Primary T cells from cord blood	blood
18	chr12:4810000-4827200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr12:4810200-4812200	Weak transcription	Lung	lung
20	chr12:4810200-4817200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr12:4810400-4811600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr12:4810400-4811600	Enhancers	HSMMtube	muscle
23	chr12:4810400-4817200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr12:4810600-4811600	Enhancers	HSMM	muscle
25	chr12:4810600-4817200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr12:4810800-4813000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr12:4810800-4813800	Weak transcription	Fetal Brain Female	brain
28	chr12:4810800-4815000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:4811200-4833600	Weak transcription	Brain Germinal Matrix	brain
30	chr12:4811400-4811600	Enhancers	Fetal Muscle Leg	muscle

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