Variant report

Variant	rs11063323
Chromosome Location	chr12:4845489-4845490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10047570	0.83[EUR][1000 genomes]
rs10744660	0.86[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs10849121	0.82[ASN][1000 genomes]
rs10849123	0.85[ASN][1000 genomes]
rs10849125	0.82[EUR][1000 genomes]
rs10849126	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs10849127	0.82[EUR][1000 genomes]
rs10849129	0.82[EUR][1000 genomes]
rs10849130	0.83[CEU][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes]
rs10849131	0.82[EUR][1000 genomes]
rs10849134	0.82[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10849137	0.82[EUR][1000 genomes]
rs11063314	0.82[EUR][1000 genomes]
rs11063318	0.85[EUR][1000 genomes]
rs11063319	0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs12296205	0.82[EUR][1000 genomes]
rs12312983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs12320374	0.82[EUR][1000 genomes]
rs12422704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1468556	0.82[CEU][hapmap]
rs1860347	0.86[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs2191157	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2286578	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs2286580	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2359466	0.82[EUR][1000 genomes]
rs2359467	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs3782740	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs3782741	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs3782742	0.87[YRI][hapmap];0.85[EUR][1000 genomes]
rs3782743	1.00[CHB][hapmap];0.96[JPT][hapmap];0.91[ASN][1000 genomes]
rs4766284	0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4766285	0.88[ASN][1000 genomes]
rs4766286	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs6489564	0.86[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs6489565	0.82[EUR][1000 genomes]
rs6489566	0.82[EUR][1000 genomes]
rs6489567	0.81[EUR][1000 genomes]
rs7132030	0.82[EUR][1000 genomes]
rs7132150	0.86[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs7305387	0.82[EUR][1000 genomes]
rs7305525	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs7307792	0.84[ASN][1000 genomes]
rs7316209	0.82[EUR][1000 genomes]
rs7953170	0.82[EUR][1000 genomes]
rs7966628	0.82[EUR][1000 genomes]
rs7975978	0.82[EUR][1000 genomes]
rs7976011	0.82[EUR][1000 genomes]
rs7979891	0.80[ASN][1000 genomes]
rs9300304	0.83[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832318	chr12:4655799-4875837	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1054218	chr12:4819576-4882667	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4827400-4849600	Weak transcription	Fetal Brain Female	brain
2	chr12:4830400-4846400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:4832200-4849800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr12:4832400-4849400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:4832600-4851600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:4834000-4870200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:4836400-4872400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr12:4837200-4853800	Weak transcription	Brain Germinal Matrix	brain
9	chr12:4842600-4852200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:4843600-4845800	Enhancers	Aorta	Aorta
11	chr12:4844000-4845600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr12:4844000-4848600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:4845000-4846600	Weak transcription	Colonic Mucosa	Colon
14	chr12:4845000-4853800	Weak transcription	Fetal Brain Male	brain
15	chr12:4845000-4872600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr12:4845200-4845800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr12:4845400-4847200	Enhancers	Rectal Mucosa Donor 31	rectum

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