Variant report

Variant	rs10849774
Chromosome Location	chr12:121082228-121082229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121081649..121083701-chr12:121086971..121089702,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157782	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10431372	0.86[EUR][1000 genomes]
rs10431383	0.86[EUR][1000 genomes]
rs10774564	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10774565	0.93[CHB][hapmap];0.83[ASN][1000 genomes]
rs10849775	0.99[ASN][1000 genomes]
rs10849780	0.86[EUR][1000 genomes]
rs10849781	1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs11065183	0.91[ASN][1000 genomes]
rs11065184	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065186	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11065188	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11065189	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11065191	0.92[CHB][hapmap];0.80[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065192	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065193	0.83[ASN][1000 genomes]
rs11065194	0.93[CHB][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11065195	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11065196	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11065197	0.93[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11065198	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11065199	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11065204	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11065205	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11065214	0.86[EUR][1000 genomes]
rs11065215	0.86[EUR][1000 genomes]
rs11065217	0.86[EUR][1000 genomes]
rs11065220	0.86[EUR][1000 genomes]
rs11065221	0.86[EUR][1000 genomes]
rs11065224	0.86[EUR][1000 genomes]
rs11065229	0.86[EUR][1000 genomes]
rs11065234	0.86[EUR][1000 genomes]
rs11065235	0.80[CHB][hapmap];0.86[EUR][1000 genomes]
rs11065240	0.80[CHB][hapmap]
rs11065241	0.80[CHB][hapmap]
rs11065242	0.80[CHB][hapmap];0.83[GIH][hapmap]
rs11065244	0.86[EUR][1000 genomes]
rs12228118	0.86[EUR][1000 genomes]
rs12228187	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12229164	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12229181	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12231499	0.86[EUR][1000 genomes]
rs12310160	0.93[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs17848090	0.86[EUR][1000 genomes]
rs2071266	0.86[EUR][1000 genomes]
rs2229534	0.83[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2239687	0.86[EUR][1000 genomes]
rs2239757	0.86[EUR][1000 genomes]
rs2239759	0.86[EUR][1000 genomes]
rs3751166	0.83[GIH][hapmap];0.86[EUR][1000 genomes]
rs3809310	0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3809311	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7302002	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7956304	0.84[CHD][hapmap];0.84[JPT][hapmap]
rs7973568	0.83[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv899557	chr12:121069201-121189116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1045923	chr12:121082203-121146219	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121079600-121086800	Weak transcription	Right Atrium	heart
2	chr12:121081800-121082400	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain

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