Variant report

Variant	rs11065205
Chromosome Location	chr12:121113372-121113373
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121110807..121113740-chr12:121121255..121124046,3	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10431372	0.81[CHB][hapmap];1.00[EUR][1000 genomes]
rs10431383	1.00[EUR][1000 genomes]
rs10774564	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs10774565	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10849774	0.93[CHB][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10849775	0.86[ASN][1000 genomes]
rs10849780	1.00[EUR][1000 genomes]
rs10849781	1.00[ASW][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11065183	0.82[ASN][1000 genomes]
rs11065184	0.93[CHB][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11065186	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11065188	0.93[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065189	0.93[CHB][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065191	0.85[CHB][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11065192	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11065193	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065194	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065195	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11065196	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11065197	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065198	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065199	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065214	0.81[CHB][hapmap];0.80[JPT][hapmap];1.00[EUR][1000 genomes]
rs11065215	0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes]
rs11065217	1.00[EUR][1000 genomes]
rs11065220	1.00[EUR][1000 genomes]
rs11065221	1.00[EUR][1000 genomes]
rs11065224	1.00[EUR][1000 genomes]
rs11065229	0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes]
rs11065234	1.00[EUR][1000 genomes]
rs11065235	1.00[ASW][hapmap];0.87[CHB][hapmap];1.00[LWK][hapmap];1.00[EUR][1000 genomes]
rs11065238	0.86[EUR][1000 genomes]
rs11065240	0.87[CHB][hapmap];0.86[EUR][1000 genomes]
rs11065241	0.87[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.86[EUR][1000 genomes]
rs11065242	0.87[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.86[EUR][1000 genomes]
rs11065244	1.00[EUR][1000 genomes]
rs11065245	0.86[EUR][1000 genomes]
rs11065246	0.86[EUR][1000 genomes]
rs11065262	0.83[EUR][1000 genomes]
rs12228118	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12228187	0.93[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12229164	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12229181	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12231101	0.86[EUR][1000 genomes]
rs12231499	1.00[EUR][1000 genomes]
rs12310160	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs17848090	1.00[EUR][1000 genomes]
rs2071266	1.00[EUR][1000 genomes]
rs2229534	1.00[ASW][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2239687	1.00[EUR][1000 genomes]
rs2239757	1.00[EUR][1000 genomes]
rs2239759	1.00[EUR][1000 genomes]
rs3751166	0.81[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[EUR][1000 genomes]
rs3809310	1.00[ASW][hapmap];0.87[CHB][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3809311	0.93[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7302002	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7973568	0.81[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv899557	chr12:121069201-121189116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1045923	chr12:121082203-121146219	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11065205	FABP4	trans	brain	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121107200-121118200	Weak transcription	Left Ventricle	heart
2	chr12:121107400-121118200	Weak transcription	Fetal Muscle Leg	muscle
3	chr12:121107400-121123400	Weak transcription	Right Atrium	heart
4	chr12:121107600-121115400	Weak transcription	A549	lung
5	chr12:121108200-121115400	Enhancers	GM12878-XiMat	blood
6	chr12:121108600-121115200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:121108600-121118000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:121110400-121116200	Enhancers	Primary B cells from cord blood	blood
9	chr12:121112400-121115400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:121112400-121115400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr12:121112400-121115400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr12:121112800-121115400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:121113000-121115400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr12:121113200-121114600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr12:121113200-121115800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links