Variant report

Variant	rs10851010
Chromosome Location	chr12:119119979-119119980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:119115880..119117499-chr12:119118007..119120826,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11069000	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11069047	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12298592	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12309659	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12322897	1.00[CEU][hapmap]
rs13377697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1566415	1.00[ASN][1000 genomes]
rs1814734	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1879405	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767701	0.89[EUR][1000 genomes]
rs55753185	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55883924	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56280547	0.86[AMR][1000 genomes]
rs56345501	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57022566	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57408027	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58438786	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7137265	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296420	0.89[EUR][1000 genomes]
rs7303736	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411684	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73415208	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73415220	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937528	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1039515	chr12:119085196-119218918	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1045363	chr12:119091734-119219659	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv519756	chr12:119092357-119227242	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119118000-119120400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr12:119118400-119127800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:119118400-119131200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:119118800-119123800	Weak transcription	Fetal Muscle Leg	muscle
5	chr12:119119000-119120000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:119119400-119120400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:119119400-119120600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:119119400-119120800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr12:119119600-119120400	Enhancers	GM12878-XiMat	blood
10	chr12:119119600-119120600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr12:119119600-119120800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:119119800-119120000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:119119800-119120200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr12:119119800-119120400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr12:119119800-119120600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr12:119119800-119120800	Enhancers	HUES6 Cell Line	embryonic stem cell

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