Variant report
| Variant | rs57408027 |
|---|---|
| Chromosome Location | chr12:119154976-119154977 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:119150767..119153153-chr12:119153929..119156219,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10851010 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11069000 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11069047 | 1.00[ASN][1000 genomes] |
| rs12298592 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12309659 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13377697 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1566415 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1814734 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1879405 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55732092 | 0.82[AMR][1000 genomes] |
| rs55753185 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55883924 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56345501 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57022566 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58438786 | 0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7137265 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7303736 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73411684 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73415208 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73415220 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv930978 | chr12:118866332-119450600 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039515 | chr12:119085196-119218918 | ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1045363 | chr12:119091734-119219659 | Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv519756 | chr12:119092357-119227242 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:119154000-119155600 | Weak transcription | HepG2 | liver |
