Variant report

Variant	rs10851060
Chromosome Location	chr12:119426053-119426054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10851061	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11069216	1.00[CHB][hapmap]
rs11069218	0.81[CHB][hapmap]
rs11069220	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11069223	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs11069224	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11069225	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs11069226	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12099608	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12321836	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1405047	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1525945	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1525946	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1525947	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1525948	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1525957	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1976923	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2177838	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2393466	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4357755	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4523746	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4526826	0.84[CEU][hapmap];0.80[AMR][1000 genomes]
rs4767756	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4767757	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4767758	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4767759	0.85[CEU][hapmap];0.80[AMR][1000 genomes]
rs58017117	0.81[ASN][1000 genomes]
rs6490220	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6490221	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6490227	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6490228	0.84[CEU][hapmap]
rs6490229	0.85[CEU][hapmap]
rs66694569	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7133570	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7294812	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7298175	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7298478	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7306122	0.84[CEU][hapmap]
rs7306928	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7308063	0.85[EUR][1000 genomes]
rs7312999	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7313274	0.84[CEU][hapmap];0.81[AMR][1000 genomes]
rs7958250	0.88[CEU][hapmap]
rs7962190	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7976598	0.84[CEU][hapmap]
rs869716	0.85[CEU][hapmap]
rs940913	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs940914	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs940915	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046251	chr12:119353064-119467301	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541615	chr12:119353064-119467301	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899549	chr12:119385260-119431075	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119424600-119427600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:119425200-119427200	Enhancers	Brain Germinal Matrix	brain
3	chr12:119425200-119427200	Enhancers	Fetal Brain Female	brain
4	chr12:119425600-119426200	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links