Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:119520274..119523110-chr12:119524611..119526386,2	K562	blood:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10851060	0.88[CEU][hapmap]
rs10851061	0.91[CEU][hapmap]
rs10851062	0.86[CHB][hapmap]
rs11069220	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs11069223	0.91[CEU][hapmap]
rs11069225	0.91[CEU][hapmap]
rs12099608	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs1525945	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs1525947	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs1830090	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2177838	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs2393466	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs4357755	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs4523746	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs4526826	0.88[CHB][hapmap]
rs4767756	0.91[CEU][hapmap]
rs4767758	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs4767759	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs56130317	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6490220	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs6490221	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs6490229	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs67000224	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7133570	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs7298175	0.91[CEU][hapmap]
rs7298478	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs7306122	0.88[CHB][hapmap]
rs7306928	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs7313274	0.88[CHB][hapmap]
rs7962190	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs7976598	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs869716	0.81[CEU][hapmap];0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119520600-119525800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:119520600-119526800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:119520800-119525800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:119520800-119526400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:119521000-119526000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:119521000-119535600	Weak transcription	Fetal Brain Female	brain
7	chr12:119521200-119525800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:119521200-119537400	Weak transcription	Brain Germinal Matrix	brain
9	chr12:119522200-119525800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:119525000-119526600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:119525000-119527000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:119525000-119529000	Enhancers	H1 Cell Line	embryonic stem cell

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