Variant report

Variant	rs10851943
Chromosome Location	chr15:34426502-34426503
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34420038..34421927-chr15:34425295..34427888,2	K562	blood:
2	chr15:34419776..34421652-chr15:34425219..34427967,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10162748	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10438390	0.85[CEU][hapmap]
rs11072971	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11072982	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12440568	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12592408	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12595294	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167700	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7168415	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34415400-34434600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:34415600-34429200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:34415600-34431400	Weak transcription	NH-A	brain
4	chr15:34415600-34432800	Weak transcription	Osteobl	bone
5	chr15:34415800-34432800	Weak transcription	NHDF-Ad	bronchial
6	chr15:34416200-34439200	Weak transcription	HUVEC	blood vessel
7	chr15:34417600-34431400	Weak transcription	HSMMtube	muscle
8	chr15:34417600-34439400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:34417800-34436800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:34419200-34431200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:34419400-34429200	Weak transcription	Placenta	Placenta
12	chr15:34419400-34429800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:34419400-34430600	Weak transcription	HMEC	breast
14	chr15:34419400-34434800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:34419400-34441800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:34421800-34431600	Weak transcription	HSMM	muscle
17	chr15:34422000-34429400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:34422000-34431400	Weak transcription	Primary T cells from cord blood	blood
19	chr15:34422600-34431000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr15:34423600-34430200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:34423600-34434600	Weak transcription	Left Ventricle	heart
22	chr15:34424400-34446400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr15:34424800-34431600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:34424800-34432400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr15:34425200-34429600	Weak transcription	Adipose Nuclei	Adipose
26	chr15:34425200-34432400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr15:34425400-34429200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:34425400-34431400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:34425400-34438200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:34425800-34429400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:34425800-34432200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:34425800-34439800	Weak transcription	Brain Hippocampus Middle	brain
33	chr15:34426200-34426600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:34426200-34431800	Weak transcription	Fetal Intestine Large	intestine
35	chr15:34426400-34426800	Genic enhancers	A549	lung
36	chr15:34426400-34427200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:34426400-34431400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:34426400-34434600	Weak transcription	Right Ventricle	heart

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