Variant report

Variant	rs10852505
Chromosome Location	chr16:71881337-71881338
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10500567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10852507	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11075906	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11075909	0.92[YRI][hapmap]
rs11075910	1.00[CHB][hapmap]
rs11639843	0.82[ASN][1000 genomes]
rs11639902	1.00[CHB][hapmap]
rs11640135	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11642529	1.00[CHB][hapmap]
rs11644740	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs11648557	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11861296	1.00[JPT][hapmap]
rs11865456	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12149307	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12149325	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12149460	1.00[JPT][hapmap]
rs12149917	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12445564	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12445641	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12448022	1.00[CHB][hapmap]
rs12448086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12708919	1.00[CHB][hapmap]
rs12921279	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12921459	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12927691	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12934512	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13330178	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17357420	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17358402	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2288030	1.00[CHB][hapmap]
rs28667298	0.89[ASN][1000 genomes]
rs2878494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3088285	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34029919	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34101687	0.82[ASN][1000 genomes]
rs34664834	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35028754	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35209006	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35404791	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35535529	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35595148	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36182990	0.82[ASN][1000 genomes]
rs3751820	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4528577	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4788568	1.00[CHB][hapmap]
rs4788579	1.00[CHB][hapmap]
rs71384781	0.91[EUR][1000 genomes]
rs71384782	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71386939	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71386940	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71386942	0.82[ASN][1000 genomes]
rs7185027	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7187418	0.92[YRI][hapmap]
rs7188591	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7191848	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7195988	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7197486	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7198834	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7200447	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7202840	1.00[CHB][hapmap]
rs73586164	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8046044	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8049163	1.00[CHB][hapmap]
rs8049508	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8050058	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8051878	1.00[CHB][hapmap]
rs8052358	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8053906	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8054602	0.92[YRI][hapmap]
rs8063657	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9932707	0.82[JPT][hapmap]
rs9939404	0.92[YRI][hapmap]
rs9939911	0.82[JPT][hapmap]
rs9940234	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71879000-71881400	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr16:71879000-71881400	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr16:71879400-71881400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:71879600-71881400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr16:71879800-71881400	Active TSS	Stomach Smooth Muscle	stomach
6	chr16:71880200-71881400	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr16:71880200-71881400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr16:71880200-71881400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:71880400-71881400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr16:71880400-71881400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr16:71880400-71881400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr16:71880400-71881600	Flanking Active TSS	Dnd41	blood
13	chr16:71880600-71881400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr16:71880600-71881400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr16:71880600-71881600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr16:71880600-71881600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr16:71880600-71881600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr16:71880600-71881800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr16:71880800-71881400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr16:71880800-71881400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr16:71880800-71881400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr16:71880800-71881400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr16:71880800-71881400	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr16:71880800-71881400	Flanking Active TSS	HMEC	breast
25	chr16:71880800-71882600	Weak transcription	Aorta	Aorta
26	chr16:71880800-71882600	Weak transcription	Esophagus	oesophagus
27	chr16:71880800-71882600	Weak transcription	Left Ventricle	heart
28	chr16:71880800-71882800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr16:71881000-71881400	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr16:71881000-71881400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr16:71881000-71881400	Enhancers	Colon Smooth Muscle	Colon
32	chr16:71881000-71881400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr16:71881000-71881400	Flanking Active TSS	HepG2	liver
34	chr16:71881000-71881600	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr16:71881000-71881600	Enhancers	Primary B cells from peripheral blood	blood
36	chr16:71881000-71881600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr16:71881000-71881600	Enhancers	Fetal Heart	heart
38	chr16:71881000-71881800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr16:71881000-71881800	Enhancers	Brain Anterior Caudate	brain
40	chr16:71881000-71882000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr16:71881000-71882000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr16:71881000-71882000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr16:71881000-71882000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr16:71881000-71882200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr16:71881000-71882600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr16:71881000-71902200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr16:71881200-71881400	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr16:71881200-71881400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr16:71881200-71881400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr16:71881200-71881400	Active TSS	HUES48 Cell Line	embryonic stem cell

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