Variant report

Variant	rs10853232
Chromosome Location	chr18:13383207-13383208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28680259	0.96[EUR][1000 genomes]
rs748733	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8096336	0.88[CEU][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13373000-13388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:13374400-13383800	Enhancers	Left Ventricle	heart
3	chr18:13375800-13383600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr18:13377800-13383400	Enhancers	Fetal Heart	heart
5	chr18:13379000-13383800	Enhancers	Right Ventricle	heart
6	chr18:13379800-13393600	Weak transcription	HepG2	liver
7	chr18:13380200-13383600	Enhancers	Esophagus	oesophagus
8	chr18:13380400-13383600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr18:13380400-13390200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr18:13381000-13383600	Enhancers	Lung	lung
11	chr18:13381400-13384000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr18:13381400-13384200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr18:13381600-13383400	Enhancers	Fetal Stomach	stomach
14	chr18:13381600-13383600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr18:13381600-13383600	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr18:13381600-13384000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr18:13381600-13384000	Enhancers	Brain Angular Gyrus	brain
18	chr18:13381600-13384200	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr18:13381600-13384200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr18:13381800-13383800	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr18:13382000-13383400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr18:13382400-13383400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr18:13382400-13383400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr18:13382400-13383400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
25	chr18:13382400-13383400	Enhancers	Small Intestine	intestine
26	chr18:13382400-13383600	Flanking Active TSS	Rectal Smooth Muscle	rectum
27	chr18:13382400-13383800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr18:13382400-13383800	Enhancers	Fetal Muscle Trunk	muscle
29	chr18:13382400-13383800	Enhancers	Fetal Muscle Leg	muscle
30	chr18:13382600-13383400	Enhancers	Primary B cells from cord blood	blood
31	chr18:13382600-13383400	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr18:13382600-13383400	Flanking Active TSS	Colonic Mucosa	Colon
33	chr18:13382600-13383400	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr18:13382600-13383400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr18:13382600-13383600	Enhancers	Liver	Liver
36	chr18:13382600-13383600	Enhancers	Gastric	stomach
37	chr18:13382600-13383600	Enhancers	Pancreas	Pancrea
38	chr18:13382600-13383600	Transcr. at gene 5' and 3'	Thymus	Thymus
39	chr18:13382600-13383800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr18:13382600-13383800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr18:13382600-13383800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr18:13382600-13383800	Enhancers	Brain Cingulate Gyrus	brain
43	chr18:13382600-13383800	Bivalent Enhancer	Placenta	Placenta
44	chr18:13382600-13383800	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr18:13382600-13384000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
46	chr18:13382600-13384000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr18:13382600-13384200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr18:13382600-13387800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr18:13382800-13383400	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr18:13382800-13383800	Enhancers	Brain Inferior Temporal Lobe	brain

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