The 2.0 version of rSNPBase

Variant report

Variant rs28680259
Chromosome Location chr18:13391955-13391956
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:13379800-13393600 Weak transcription HepG2 liver
2 chr18:13383000-13393400 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr18:13383000-13393800 Weak transcription Fetal Lung lung
4 chr18:13383400-13409000 Weak transcription Small Intestine intestine
5 chr18:13383600-13398600 Weak transcription Pancreas Pancrea
6 chr18:13383600-13410200 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr18:13383600-13411800 Weak transcription Esophagus oesophagus
8 chr18:13383600-13421200 Weak transcription Gastric stomach
9 chr18:13383800-13412000 Weak transcription Primary hematopoietic stem cells blood
10 chr18:13385000-13393400 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr18:13385200-13405800 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr18:13385600-13420800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
13 chr18:13388400-13392600 Genic enhancers Primary T regulatory cells fromperipheralblood blood
14 chr18:13388400-13399600 Weak transcription Brain Germinal Matrix brain
15 chr18:13388800-13392800 Genic enhancers Thymus Thymus
16 chr18:13388800-13411800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr18:13388800-13416800 Weak transcription Rectal Smooth Muscle rectum
18 chr18:13389000-13393800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr18:13389000-13394800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr18:13389000-13394800 Weak transcription Brain Hippocampus Middle brain
21 chr18:13389000-13412000 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr18:13389200-13394800 Weak transcription Fetal Heart heart
23 chr18:13389200-13397800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
24 chr18:13389200-13410000 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr18:13389400-13392000 Weak transcription Colonic Mucosa Colon
26 chr18:13389400-13394800 Weak transcription Duodenum Mucosa Duodenum
27 chr18:13389400-13405800 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr18:13389400-13406000 Weak transcription Adipose Nuclei Adipose
29 chr18:13389400-13407600 Weak transcription Fetal Muscle Leg muscle
30 chr18:13390400-13392000 Weak transcription Primary T helper cells fromperipheralblood blood
31 chr18:13390400-13392200 Weak transcription Primary T cells fromperipheralblood blood
32 chr18:13390400-13394000 Enhancers Breast Myoepithelial Primary Cells Breast
33 chr18:13390400-13394800 Weak transcription Spleen Spleen
34 chr18:13390400-13425600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr18:13390600-13394800 Weak transcription Colon Smooth Muscle Colon
36 chr18:13390600-13394800 Weak transcription Dnd41 blood
37 chr18:13390600-13397400 Weak transcription Fetal Stomach stomach
38 chr18:13390600-13399600 Weak transcription Stomach Smooth Muscle stomach
39 chr18:13390600-13401400 Weak transcription Right Ventricle heart
40 chr18:13390600-13406000 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr18:13390800-13392400 Weak transcription Primary T cells from cord blood blood
42 chr18:13390800-13393000 Enhancers Brain Anterior Caudate brain
43 chr18:13390800-13402800 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr18:13391000-13393200 Weak transcription Liver Liver
45 chr18:13391000-13393800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
46 chr18:13391000-13394800 Weak transcription Primary T helper cells PMA-I stimulated --
47 chr18:13391000-13394800 Weak transcription Right Atrium heart
48 chr18:13391400-13392200 Weak transcription Fetal Brain Female brain
49 chr18:13391400-13394600 Weak transcription Brain Cingulate Gyrus brain
50 chr18:13391400-13394600 Weak transcription Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015