Variant report

Variant	rs10853235
Chromosome Location	chr18:13517803-13517804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13504939..13506992-chr18:13515304..13518121,2	MCF-7	breast:
2	chr18:13512015..13513700-chr18:13517381..13520375,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10163734	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10853236	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12458741	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12955640	0.92[ASN][1000 genomes]
rs1648585	0.92[ASN][1000 genomes]
rs1648586	0.92[ASN][1000 genomes]
rs1648587	0.92[ASN][1000 genomes]
rs1648593	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1785151	0.92[ASN][1000 genomes]
rs1785152	0.92[ASN][1000 genomes]
rs1785205	0.92[ASN][1000 genomes]
rs2027682	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2027683	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3859302	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6505818	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6505819	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6505820	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6505821	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6505822	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7227383	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7230189	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7230276	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7239669	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7240821	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7241010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7241766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8088361	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8091197	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8091352	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8092166	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	esv1827877	chr18:13511622-13523462	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13471000-13537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr18:13499600-13539200	Weak transcription	Gastric	stomach
3	chr18:13499800-13531000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr18:13501400-13518200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr18:13501600-13525000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:13501800-13530600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr18:13502800-13525200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr18:13503000-13519200	Weak transcription	Pancreas	Pancrea
9	chr18:13503200-13521000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr18:13505000-13536000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr18:13507000-13536400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr18:13511600-13530400	Weak transcription	Colon Smooth Muscle	Colon
13	chr18:13512000-13518200	Weak transcription	Brain Hippocampus Middle	brain
14	chr18:13512200-13521600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr18:13512800-13518400	Strong transcription	Dnd41	blood
16	chr18:13513200-13520000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr18:13513200-13526600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr18:13513200-13538200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr18:13513400-13523800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr18:13513600-13519400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr18:13513800-13520200	Strong transcription	Primary T cells from cord blood	blood
22	chr18:13513800-13520200	Weak transcription	Left Ventricle	heart
23	chr18:13514000-13520000	Weak transcription	Fetal Heart	heart
24	chr18:13514000-13520200	Weak transcription	Psoas Muscle	Psoas
25	chr18:13514000-13523800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr18:13514200-13519200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr18:13514400-13519000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr18:13515400-13520200	Weak transcription	Right Atrium	heart
29	chr18:13515600-13519000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr18:13515600-13520000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr18:13515600-13521000	Weak transcription	Brain Anterior Caudate	brain
32	chr18:13516200-13519400	Strong transcription	Liver	Liver
33	chr18:13516800-13518000	ZNF genes & repeats	Fetal Stomach	stomach
34	chr18:13516800-13518200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr18:13517000-13532400	Weak transcription	HepG2	liver
36	chr18:13517200-13518000	Strong transcription	Primary hematopoietic stem cells	blood
37	chr18:13517200-13519000	ZNF genes & repeats	Fetal Brain Female	brain
38	chr18:13517200-13519000	Strong transcription	Fetal Lung	lung
39	chr18:13517200-13519200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr18:13517400-13525000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr18:13517600-13520000	Weak transcription	Adipose Nuclei	Adipose
42	chr18:13517600-13520000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr18:13517600-13520200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr18:13517600-13520600	Weak transcription	Lung	lung
45	chr18:13517600-13521000	Strong transcription	Thymus	Thymus
46	chr18:13517600-13521400	Strong transcription	Fetal Thymus	thymus
47	chr18:13517600-13523200	Weak transcription	Primary B cells from cord blood	blood
48	chr18:13517600-13523600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr18:13517600-13523600	Weak transcription	Spleen	Spleen
50	chr18:13517600-13524800	Weak transcription	Stomach Smooth Muscle	stomach

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