Variant report

Variant	rs10853709
Chromosome Location	chr18:28399799-28399800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11083418	0.90[EUR][1000 genomes]
rs11660936	0.89[ASN][1000 genomes]
rs1369360	0.92[ASN][1000 genomes]
rs16948455	0.91[ASN][1000 genomes]
rs17725004	0.90[EUR][1000 genomes]
rs17797961	0.90[EUR][1000 genomes]
rs2850267	0.92[ASN][1000 genomes]
rs4121810	0.88[ASN][1000 genomes]
rs4547414	0.93[ASN][1000 genomes]
rs4799302	0.90[EUR][1000 genomes]
rs9304563	0.93[ASN][1000 genomes]
rs9950324	0.93[ASN][1000 genomes]
rs9951783	0.92[ASN][1000 genomes]
rs9962586	0.93[ASN][1000 genomes]
rs9966361	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428675	chr18:28278505-28444515	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909514	chr18:28321803-28420334	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28399600-28400000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links