Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10853709	0.89[ASN][1000 genomes]
rs1369360	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16948455	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1943532	0.83[AMR][1000 genomes]
rs2850267	0.95[ASN][1000 genomes]
rs28510557	0.84[AMR][1000 genomes]
rs3898132	0.84[AMR][1000 genomes]
rs4121810	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4547414	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4598986	0.84[AMR][1000 genomes]
rs4799299	0.84[AMR][1000 genomes]
rs56027591	0.84[AMR][1000 genomes]
rs62086430	0.86[AMR][1000 genomes]
rs73952509	0.84[AMR][1000 genomes]
rs9304563	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9635999	0.84[AMR][1000 genomes]
rs9947312	0.83[AMR][1000 genomes]
rs9950324	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9951783	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9962487	0.84[AMR][1000 genomes]
rs9962586	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9966361	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428675	chr18:28278505-28444515	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909514	chr18:28321803-28420334	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv961125	chr18:28354817-28370499	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28367000-28367800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr18:28367000-28368000	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search: