Variant report

Variant	rs10857061
Chromosome Location	chr4:119781338-119781339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10471012	0.93[ASN][1000 genomes]
rs1365548	0.97[ASN][1000 genomes]
rs1426813	0.82[CHB][hapmap]
rs1896185	0.97[ASN][1000 genomes]
rs2017575	0.88[ASN][1000 genomes]
rs2389691	0.98[ASN][1000 genomes]
rs2892829	0.94[ASN][1000 genomes]
rs4240322	0.85[ASN][1000 genomes]
rs4834708	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs6830196	0.88[ASN][1000 genomes]
rs7676892	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10857061	FGF2	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119772400-119788200	Weak transcription	NHDF-Ad	bronchial
2	chr4:119776600-119781800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:119780200-119782800	Weak transcription	Ovary	ovary
4	chr4:119780200-119788400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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