Variant report

Variant	rs7676892
Chromosome Location	chr4:119768598-119768599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10471012	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10857061	0.86[ASN][1000 genomes]
rs1365548	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1426813	0.90[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1426820	0.82[YRI][hapmap]
rs1896185	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2017575	0.88[EUR][1000 genomes]
rs2389687	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2389691	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2892829	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4240322	0.86[EUR][1000 genomes]
rs4834708	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6830196	0.88[EUR][1000 genomes]
rs6838071	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6843524	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3376985	chr4:119757182-119774736	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119758200-119771200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:119762800-119771400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:119763000-119769800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:119763200-119769600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:119764000-119771000	Weak transcription	NHDF-Ad	bronchial
6	chr4:119764000-119771200	Weak transcription	NHEK	skin
7	chr4:119764000-119771200	Weak transcription	Osteobl	bone
8	chr4:119764000-119771600	Weak transcription	HSMM	muscle
9	chr4:119764800-119771400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:119764800-119771600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:119764800-119771800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:119766800-119768600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:119767000-119771400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:119767600-119768600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr4:119768200-119768600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr4:119768200-119768600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr4:119768400-119769600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:119768400-119769600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:119768400-119769800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr4:119768400-119769800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links