Variant report

Variant	rs10857577
Chromosome Location	chr10:49684755-49684756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49629411..49632301-chr10:49684401..49686172,3	K562	blood:
2	chr10:49683409..49685423-chr10:49724678..49727528,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10776606	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1077960	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10857578	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10857579	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10857580	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10857582	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11817012	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3888298	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3889332	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3910908	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4080664	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4342982	0.82[ASN][1000 genomes]
rs7070411	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49678200-49687200	Weak transcription	HSMMtube	muscle
2	chr10:49679200-49690400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:49679400-49686200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:49679600-49685400	Weak transcription	Brain Angular Gyrus	brain
5	chr10:49679800-49686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:49679800-49689000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:49679800-49704200	Weak transcription	NH-A	brain
8	chr10:49679800-49704200	Weak transcription	NHDF-Ad	bronchial
9	chr10:49681200-49689200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:49682800-49685400	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:49683000-49686200	Enhancers	K562	blood
12	chr10:49683200-49687600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:49683400-49684800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:49683400-49689200	Strong transcription	NHLF	lung
15	chr10:49683600-49687400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:49683600-49688800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:49683800-49689600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:49684000-49684800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:49684000-49684800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr10:49684000-49684800	Enhancers	Placenta	Placenta
21	chr10:49684000-49685000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:49684000-49685000	Enhancers	Ovary	ovary
23	chr10:49684000-49685400	Weak transcription	Brain Substantia Nigra	brain
24	chr10:49684000-49685400	Strong transcription	Osteobl	bone
25	chr10:49684000-49685800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr10:49684000-49685800	Enhancers	HMEC	breast
27	chr10:49684000-49686800	Weak transcription	Spleen	Spleen
28	chr10:49684000-49689000	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr10:49684200-49684800	Enhancers	Fetal Thymus	thymus
30	chr10:49684200-49684800	Enhancers	Left Ventricle	heart
31	chr10:49684200-49685000	Enhancers	H1 Cell Line	embryonic stem cell
32	chr10:49684200-49685000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr10:49684200-49685000	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr10:49684200-49685200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr10:49684200-49685200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:49684200-49685200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:49684200-49685800	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr10:49684200-49685800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:49684200-49685800	Enhancers	HUVEC	blood vessel
40	chr10:49684400-49684800	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr10:49684400-49685000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:49684400-49685000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:49684400-49685000	Enhancers	GM12878-XiMat	blood
44	chr10:49684400-49688600	Weak transcription	Right Atrium	heart
45	chr10:49684600-49684800	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr10:49684600-49684800	Bivalent Enhancer	Fetal Muscle Leg	muscle
47	chr10:49684600-49685000	Enhancers	NHEK	skin
48	chr10:49684600-49685600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:49684600-49685800	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr10:49684600-49687000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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