Variant report

Variant	rs10857582
Chromosome Location	chr10:49699016-49699017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49698967..49701120-chr10:49704411..49706305,2	K562	blood:
2	chr10:49698395..49701025-chr10:49710345..49712604,2	K562	blood:
3	chr10:49698265..49700401-chr10:49714707..49717015,2	K562	blood:
4	chr10:49698335..49701028-chr10:49818067..49819689,2	K562	blood:
5	chr10:49692019..49695584-chr10:49695676..49700242,5	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10776606	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077960	0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857577	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10857578	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10857579	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10857580	0.89[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11101348	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs11101349	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs11817012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763969	0.84[JPT][hapmap]
rs12768718	0.84[JPT][hapmap]
rs3888298	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3889332	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3910908	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4080664	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4838413	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs4838596	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs4838608	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs4838609	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs6537565	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs7070411	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7098760	0.83[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49679800-49704200	Weak transcription	NH-A	brain
2	chr10:49679800-49704200	Weak transcription	NHDF-Ad	bronchial
3	chr10:49685600-49701000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:49685800-49704800	Weak transcription	HUVEC	blood vessel
5	chr10:49687000-49704400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:49687600-49703800	Weak transcription	HSMMtube	muscle
7	chr10:49687800-49699200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:49688800-49699400	Weak transcription	Osteobl	bone
9	chr10:49689200-49701400	Weak transcription	Right Atrium	heart
10	chr10:49689400-49701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:49693000-49701800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:49695400-49699200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:49696800-49702600	Weak transcription	HSMM	muscle
14	chr10:49697200-49700600	Weak transcription	K562	blood
15	chr10:49698000-49699200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:49698000-49699200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:49698000-49731200	Weak transcription	Aorta	Aorta
18	chr10:49698200-49699800	Strong transcription	NHLF	lung
19	chr10:49698200-49702600	Enhancers	Brain Substantia Nigra	brain
20	chr10:49698400-49703800	Enhancers	Primary hematopoietic stem cells	blood
21	chr10:49698600-49699200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:49698600-49700600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr10:49698800-49700000	Enhancers	Fetal Stomach	stomach
24	chr10:49698800-49701000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr10:49699000-49700200	Enhancers	Brain Hippocampus Middle	brain
26	chr10:49699000-49702200	Enhancers	Brain Inferior Temporal Lobe	brain

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