Variant report

Variant	rs10857618
Chromosome Location	chr10:49900195-49900196
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49899844..49902277-chr10:50218756..50220878,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11101422	0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[ASN][1000 genomes]
rs11101429	0.84[JPT][hapmap]
rs12762257	0.83[JPT][hapmap]
rs4012685	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4012686	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4638227	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49894000-49901200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:49895000-49900800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:49895200-49904200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:49895200-49906200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
6	chr10:49897400-49903200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:49897800-49901600	Genic enhancers	Primary B cells from cord blood	blood
8	chr10:49899200-49900400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:49899600-49901200	Genic enhancers	GM12878-XiMat	blood
10	chr10:49899600-49903800	Weak transcription	Spleen	Spleen
11	chr10:49899800-49900400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr10:49899800-49900800	Genic enhancers	Monocytes-CD14+_RO01746	blood
13	chr10:49899800-49901000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr10:49899800-49901200	Enhancers	Brain Germinal Matrix	brain
15	chr10:49900000-49900200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:49900000-49900200	Enhancers	Colonic Mucosa	Colon
17	chr10:49900000-49900400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:49900000-49901000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr10:49900000-49901200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:49900000-49901200	Enhancers	Esophagus	oesophagus

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