Variant report

Variant	rs12762257
Chromosome Location	chr10:49896675-49896676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49895299..49896827-chr10:49902202..49904917,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1004407	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10857618	0.83[JPT][hapmap]
rs11101421	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11101422	0.94[JPT][hapmap]
rs11101423	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101425	1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11101428	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101429	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11592613	1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11598871	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11599300	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12240597	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12241103	0.86[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12263405	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2377608	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4269848	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4614358	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4638227	0.81[JPT][hapmap]
rs4838635	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4838636	0.86[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4838638	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56136724	0.83[AFR][1000 genomes]
rs6537571	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67580405	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7093881	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71500246	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73304235	0.81[ASN][1000 genomes]
rs7895383	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs950275	0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49893200-49899000	Weak transcription	Esophagus	oesophagus
2	chr10:49893400-49899000	Weak transcription	Spleen	Spleen
3	chr10:49893600-49898600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:49893800-49897400	Enhancers	Primary hematopoietic stem cells	blood
5	chr10:49894000-49901200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:49894400-49898000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:49894400-49900000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:49895000-49900800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:49895200-49904200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:49895200-49906200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:49895400-49897000	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:49895600-49897800	Enhancers	Primary B cells from cord blood	blood
13	chr10:49896000-49897200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr10:49896600-49897200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr10:49896600-49897400	Flanking Active TSS	GM12878-XiMat	blood

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