Variant report

Variant	rs2377608
Chromosome Location	chr10:49892969-49892970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49892922..49893831-chr9:6757454..6758047,2	NB4	blood:
2	chr10:49892856..49893405-chr5:90676308..90676928,2	NB4	blood:

Variant related genes	Relation type
ENSG00000107077	Chromatin interaction
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1004407	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11101421	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11101423	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101425	0.92[ASN][1000 genomes]
rs11101428	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101429	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592613	0.92[ASN][1000 genomes]
rs11598871	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11599300	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12240597	0.91[ASN][1000 genomes]
rs12241103	0.91[ASN][1000 genomes]
rs12263405	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12762257	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4269848	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4614358	0.92[ASN][1000 genomes]
rs4838635	0.92[ASN][1000 genomes]
rs4838636	0.92[ASN][1000 genomes]
rs4838638	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6537571	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67580405	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7093881	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71500246	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73304235	0.81[ASN][1000 genomes]
rs7895383	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950275	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49890600-49893000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:49891200-49893000	Enhancers	Fetal Thymus	thymus
3	chr10:49891400-49893200	Flanking Active TSS	GM12878-XiMat	blood
4	chr10:49891600-49894800	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr10:49892200-49893000	Enhancers	Primary hematopoietic stem cells	blood
6	chr10:49892200-49894400	Flanking Active TSS	Primary B cells from peripheral blood	blood
7	chr10:49892400-49893000	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:49892400-49893200	Enhancers	Esophagus	oesophagus
9	chr10:49892400-49893400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr10:49892400-49894200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:49892400-49894400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr10:49892600-49893000	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr10:49892600-49893000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:49892600-49893000	Enhancers	Spleen	Spleen
15	chr10:49892600-49894200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:49892600-49895400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr10:49892800-49893200	Active TSS	Primary monocytes fromperipheralblood	blood
18	chr10:49892800-49893400	Active TSS	Colonic Mucosa	Colon
19	chr10:49892800-49894000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
20	chr10:49892800-49894200	Weak transcription	Fetal Heart	heart
21	chr10:49892800-49894400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood

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