Variant report

Variant	rs12263405
Chromosome Location	chr10:49897657-49897658
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1004407	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11101421	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101423	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101425	0.91[ASN][1000 genomes]
rs11101428	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101429	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11592613	0.91[ASN][1000 genomes]
rs11598871	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11599300	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12240597	0.92[ASN][1000 genomes]
rs12241103	0.92[ASN][1000 genomes]
rs12762257	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2377608	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4269848	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4614358	0.91[ASN][1000 genomes]
rs4838635	0.91[ASN][1000 genomes]
rs4838636	0.91[ASN][1000 genomes]
rs4838638	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6537571	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67580405	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7093881	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71500246	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73304235	0.80[ASN][1000 genomes]
rs7895383	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs950275	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49893200-49899000	Weak transcription	Esophagus	oesophagus
2	chr10:49893400-49899000	Weak transcription	Spleen	Spleen
3	chr10:49893600-49898600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:49894000-49901200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:49894400-49898000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:49894400-49900000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:49895000-49900800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:49895200-49904200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:49895200-49906200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:49895600-49897800	Enhancers	Primary B cells from cord blood	blood
11	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
12	chr10:49897200-49898000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:49897200-49899800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:49897400-49897800	Active TSS	GM12878-XiMat	blood
15	chr10:49897400-49903200	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links