Variant report
| Variant | rs67580405 |
|---|---|
| Chromosome Location | chr10:49884944-49884945 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:49880056..49882618-chr10:49883091..49885631,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236800 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1004407 | 0.98[EUR][1000 genomes] |
| rs11101421 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11101423 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11101425 | 0.85[ASN][1000 genomes] |
| rs11101428 | 0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11101429 | 0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11592613 | 0.85[ASN][1000 genomes] |
| rs11598871 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11599300 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12240597 | 0.84[ASN][1000 genomes] |
| rs12241103 | 0.84[ASN][1000 genomes] |
| rs12263405 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12762257 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2377608 | 0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4269848 | 0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4614358 | 0.85[ASN][1000 genomes] |
| rs4838635 | 0.85[ASN][1000 genomes] |
| rs4838636 | 0.85[ASN][1000 genomes] |
| rs4838638 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6537571 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7093881 | 0.86[ASN][1000 genomes] |
| rs71500246 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73304235 | 0.81[ASN][1000 genomes] |
| rs7895383 | 0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs950275 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895371 | chr10:49492075-50232180 | Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv895372 | chr10:49576878-49933488 | Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 3 | esv3426835 | chr10:49881596-49886494 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:49882200-49885600 | Weak transcription | Primary B cells from peripheral blood | blood |
| 2 | chr10:49882400-49885400 | Weak transcription | Primary B cells from cord blood | blood |
