Variant report

Variant	rs56136724
Chromosome Location	chr10:49880385-49880386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11101420	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11101425	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11592613	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11597062	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11598871	0.92[ASN][1000 genomes]
rs11599300	0.92[ASN][1000 genomes]
rs12240597	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12241103	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12762257	0.83[AFR][1000 genomes]
rs4614358	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4838635	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4838636	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5001509	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5001511	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73304235	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs950275	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49879000-49881600	Flanking Active TSS	GM12878-XiMat	blood
2	chr10:49879200-49880400	Bivalent Enhancer	Fetal Stomach	stomach
3	chr10:49879200-49880600	Enhancers	Fetal Muscle Leg	muscle
4	chr10:49879400-49880600	Enhancers	Fetal Thymus	thymus
5	chr10:49879400-49881400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:49879600-49880400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr10:49879600-49880600	Enhancers	Esophagus	oesophagus
8	chr10:49879800-49880400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:49879800-49880400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:49880000-49881000	Flanking Active TSS	Primary B cells from peripheral blood	blood
11	chr10:49880200-49880600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:49880200-49881000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:49880200-49881800	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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