Variant report

Variant	rs5001509
Chromosome Location	chr10:49883569-49883570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11101420	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11101425	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11592613	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11597062	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11598871	0.83[ASN][1000 genomes]
rs11599300	0.83[ASN][1000 genomes]
rs12240597	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12241103	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4614358	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4838635	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4838636	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5001511	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56136724	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs950275	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv3426835	chr10:49881596-49886494	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49882200-49885600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr10:49882400-49885400	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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