Variant report

Variant	rs10861268
Chromosome Location	chr12:105064980-105064981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:105064637..105067234-chr12:105069243..105072797,3	MCF-7	breast:
2	chr12:105054843..105056808-chr12:105063463..105065302,2	MCF-7	breast:
3	chr12:105060606..105063528-chr12:105064614..105066569,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10861269	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]
rs11112155	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs11112156	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11112157	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11112159	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11112160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11112161	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11112162	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11112163	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11112164	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs11112165	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs11112166	0.80[ASN][1000 genomes]
rs11112167	1.00[TSI][hapmap]
rs11112168	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11112169	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12581027	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs703668	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs703669	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs703670	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs703673	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs703674	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs703675	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs703679	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7133386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1050695	chr12:105000981-105125161	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv541589	chr12:105000981-105125161	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3439380	chr12:105062222-105066520	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105051000-105065000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr12:105051800-105065000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:105060200-105068400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:105060400-105066800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr12:105060400-105067000	Enhancers	Pancreas	Pancrea
6	chr12:105060600-105066200	Enhancers	Fetal Lung	lung
7	chr12:105060600-105066600	Enhancers	Brain Cingulate Gyrus	brain
8	chr12:105060800-105065800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:105060800-105067800	Enhancers	Placenta	Placenta
10	chr12:105061000-105067800	Enhancers	Gastric	stomach
11	chr12:105061000-105068000	Enhancers	Fetal Muscle Leg	muscle
12	chr12:105061000-105068200	Enhancers	Fetal Stomach	stomach
13	chr12:105061200-105066200	Enhancers	Duodenum Mucosa	Duodenum
14	chr12:105061200-105067200	Enhancers	Adipose Nuclei	Adipose
15	chr12:105061200-105067200	Enhancers	Left Ventricle	heart
16	chr12:105061200-105067800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:105061200-105068200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr12:105061400-105065600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:105061400-105066200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr12:105061400-105067200	Enhancers	Brain Angular Gyrus	brain
21	chr12:105061600-105066000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr12:105061600-105066200	Enhancers	Fetal Brain Male	brain
23	chr12:105061800-105066000	Enhancers	HSMMtube	muscle
24	chr12:105061800-105066800	Enhancers	Primary hematopoietic stem cells	blood
25	chr12:105062000-105065000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr12:105062000-105065800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr12:105062000-105066200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr12:105062000-105066600	Enhancers	Primary B cells from peripheral blood	blood
29	chr12:105062000-105066800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr12:105062000-105066800	Enhancers	Lung	lung
31	chr12:105062000-105067000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr12:105062000-105068000	Enhancers	NHLF	lung
33	chr12:105062000-105068400	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr12:105062200-105065400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr12:105062200-105065600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr12:105062200-105065800	Enhancers	NHDF-Ad	bronchial
37	chr12:105062200-105066000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr12:105062200-105066000	Enhancers	Fetal Thymus	thymus
39	chr12:105062200-105066200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr12:105062200-105066200	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr12:105062200-105066600	Enhancers	Spleen	Spleen
42	chr12:105062200-105066600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr12:105062200-105067600	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr12:105062200-105067800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr12:105062400-105066200	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr12:105062400-105066800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr12:105062400-105067000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr12:105062400-105067000	Enhancers	NHEK	skin
49	chr12:105062400-105067600	Enhancers	HMEC	breast
50	chr12:105062600-105065000	Enhancers	Duodenum Smooth Muscle	Duodenum

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