Variant report

Variant	rs11112161
Chromosome Location	chr12:105070925-105070926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:105064637..105067234-chr12:105069243..105072797,3	MCF-7	breast:
2	chr12:105067366..105069246-chr12:105069344..105071422,3	MCF-7	breast:
3	chr12:105061726..105063507-chr12:105070074..105072816,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10861268	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861269	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11112155	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs11112156	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11112157	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11112158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11112159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112162	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112163	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112164	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11112165	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11112166	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11112167	1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs11112168	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs11112169	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs12581027	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs703668	0.88[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs703669	0.88[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs703670	0.88[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs703673	0.88[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs703674	0.88[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs703675	0.88[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs703679	0.88[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs7133386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1050695	chr12:105000981-105125161	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv541589	chr12:105000981-105125161	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105065400-105076000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:105065600-105075400	Weak transcription	Primary T cells from cord blood	blood
3	chr12:105066000-105071200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:105066000-105072800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:105066000-105073000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:105066000-105073600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr12:105066000-105073800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr12:105066000-105074000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:105066000-105074000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr12:105066200-105071000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:105066200-105073200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr12:105066200-105073600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr12:105066200-105074200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:105066200-105074200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr12:105066400-105074200	Weak transcription	Thymus	Thymus
16	chr12:105066600-105073400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr12:105066600-105073400	Weak transcription	Spleen	Spleen
18	chr12:105066600-105077800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr12:105066800-105071200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr12:105066800-105073400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr12:105067200-105071000	Weak transcription	Brain Angular Gyrus	brain
22	chr12:105067600-105071000	Weak transcription	HMEC	breast
23	chr12:105067600-105076400	Weak transcription	Brain Anterior Caudate	brain
24	chr12:105067800-105071600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr12:105067800-105073600	Weak transcription	Fetal Thymus	thymus
26	chr12:105067800-105076200	Weak transcription	Right Ventricle	heart
27	chr12:105067800-105076600	Weak transcription	Left Ventricle	heart
28	chr12:105067800-105078600	Weak transcription	Brain Substantia Nigra	brain
29	chr12:105067800-105096000	Weak transcription	K562	blood
30	chr12:105068000-105071400	Weak transcription	Pancreas	Pancrea
31	chr12:105068000-105072800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr12:105068000-105073000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr12:105068000-105073800	Weak transcription	HSMMtube	muscle
34	chr12:105068000-105076000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr12:105068000-105077600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr12:105068200-105074000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr12:105068200-105078600	Weak transcription	NHDF-Ad	bronchial
38	chr12:105068400-105071400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr12:105068400-105073400	Weak transcription	A549	lung
40	chr12:105068400-105076200	Weak transcription	Colon Smooth Muscle	Colon
41	chr12:105069200-105073800	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr12:105069400-105072200	Enhancers	Primary B cells from peripheral blood	blood
43	chr12:105069400-105074200	Genic enhancers	Dnd41	blood
44	chr12:105069400-105076400	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr12:105069800-105071400	Enhancers	Primary B cells from cord blood	blood
46	chr12:105069800-105071800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr12:105069800-105074600	Enhancers	Placenta	Placenta
48	chr12:105070000-105073000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr12:105070200-105071600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr12:105070200-105071800	Enhancers	Fetal Muscle Trunk	muscle

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