Variant report

Variant	rs10861528
Chromosome Location	chr12:106266488-106266489
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10507203	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10861526	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10861527	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10861529	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10861530	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11112776	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11112789	0.91[ASN][1000 genomes]
rs12367295	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1421441	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1541629	0.91[ASN][1000 genomes]
rs1862027	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1862028	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1895104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7300496	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7968454	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7968564	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7980152	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106261400-106273000	Weak transcription	HSMMtube	muscle
2	chr12:106264200-106276200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:106266200-106267000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links