Variant report

Variant	rs7980152
Chromosome Location	chr12:106258862-106258863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106256670..106259118-chr12:106531259..106533128,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10507203	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10861526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861527	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861528	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10861529	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10861531	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11112776	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112789	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11112791	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11615749	0.87[EUR][1000 genomes]
rs12301955	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12302909	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12307410	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs12367295	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12368539	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12423582	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12426023	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1345544	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1345545	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1421441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1421464	0.86[EUR][1000 genomes]
rs1421467	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1541629	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17278606	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1862027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1862028	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1895104	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2374559	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2374561	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs28635481	0.84[EUR][1000 genomes]
rs4620812	0.84[EUR][1000 genomes]
rs7133626	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7297930	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7300496	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7300906	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7300926	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7305359	0.87[EUR][1000 genomes]
rs73387048	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7960296	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs7960880	0.86[EUR][1000 genomes]
rs7964927	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7968454	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7968564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106255200-106259600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:106258400-106259600	Genic enhancers	HSMMtube	muscle
3	chr12:106258800-106259200	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links