Variant report

Variant	rs10861606
Chromosome Location	chr12:106833816-106833817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2252929	0.81[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2465355	0.87[ASN][1000 genomes]
rs2704900	0.94[CEU][hapmap];0.88[CHB][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435035	chr12:106765277-107015325	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832510	chr12:106787730-106951140	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10861606	TCP11L2	cis	cerebellum	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106774400-106834000	Weak transcription	Small Intestine	intestine
2	chr12:106787600-106856600	Weak transcription	GM12878-XiMat	blood
3	chr12:106787800-106852400	Weak transcription	Gastric	stomach
4	chr12:106787800-106852800	Weak transcription	Pancreas	Pancrea
5	chr12:106802400-106854000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:106812000-106855000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:106813000-106839600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:106813000-106864800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:106813200-106852800	Weak transcription	HMEC	breast
10	chr12:106813200-106855800	Weak transcription	NHDF-Ad	bronchial
11	chr12:106813200-106864800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:106814400-106855800	Weak transcription	Stomach Mucosa	stomach
13	chr12:106819400-106839400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:106819400-106839800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:106819400-106855600	Weak transcription	Right Ventricle	heart
16	chr12:106819600-106845000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr12:106819600-106846000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr12:106821000-106836600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr12:106822000-106852400	Weak transcription	Brain Angular Gyrus	brain
20	chr12:106822000-106853400	Weak transcription	Fetal Brain Female	brain
21	chr12:106822400-106848400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr12:106823000-106838400	Weak transcription	Fetal Brain Male	brain
23	chr12:106823200-106839200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr12:106823200-106858000	Weak transcription	Psoas Muscle	Psoas
25	chr12:106824000-106834800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr12:106824200-106835200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr12:106824800-106866400	Weak transcription	NHLF	lung
28	chr12:106825800-106835400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr12:106826200-106834800	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr12:106826200-106843600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr12:106826400-106834400	Strong transcription	Placenta	Placenta
32	chr12:106826400-106834600	Strong transcription	Fetal Muscle Trunk	muscle
33	chr12:106826400-106835400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr12:106826600-106834400	Strong transcription	Fetal Muscle Leg	muscle
35	chr12:106826600-106834800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr12:106826600-106835200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr12:106826600-106835400	Strong transcription	Duodenum Mucosa	Duodenum
38	chr12:106826800-106835400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr12:106826800-106835400	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr12:106826800-106836800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr12:106827000-106835000	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr12:106827200-106835200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr12:106827200-106853000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr12:106827200-106853200	Weak transcription	Fetal Heart	heart
45	chr12:106827400-106834600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr12:106827600-106834400	Strong transcription	Adipose Nuclei	Adipose
47	chr12:106827800-106834200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr12:106827800-106836800	Strong transcription	Liver	Liver
49	chr12:106827800-106839200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr12:106828000-106834400	Strong transcription	Skeletal Muscle Female	skeletal muscle

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