Variant report

Variant	rs2252929
Chromosome Location	chr12:106740540-106740541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106739203..106740891-chr12:106742866..106745239,2	K562	blood:
2	chr12:106621785..106624266-chr12:106738678..106741420,2	MCF-7	breast:
3	chr12:106739391..106742209-chr12:106742866..106744499,2	K562	blood:
4	chr12:106641249..106642821-chr12:106739631..106741226,2	MCF-7	breast:
5	chr12:106739208..106741213-chr12:106743034..106745596,2	MCF-7	breast:
6	chr12:106717961..106720483-chr12:106738715..106741683,2	K562	blood:
7	chr12:106739700..106741881-chr12:106744075..106745674,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136026	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10861606	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2465355	0.86[ASN][1000 genomes]
rs2704900	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2252929	TCP11L2	cis	cerebellum	SCAN

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106705200-106743400	Strong transcription	Primary T cells fromperipheralblood	blood
2	chr12:106705400-106743200	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr12:106708000-106740600	Strong transcription	Primary T cells from cord blood	blood
4	chr12:106708000-106741000	Strong transcription	Primary B cells from peripheral blood	blood
5	chr12:106713400-106741600	Weak transcription	Small Intestine	intestine
6	chr12:106723600-106751000	Weak transcription	Fetal Kidney	kidney
7	chr12:106724000-106742600	Strong transcription	Primary B cells from cord blood	blood
8	chr12:106724000-106751000	Weak transcription	Fetal Brain Female	brain
9	chr12:106731200-106743600	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr12:106733200-106741000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr12:106733200-106742600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr12:106734600-106741200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr12:106735800-106751000	Weak transcription	Colonic Mucosa	Colon
14	chr12:106736200-106751400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:106736600-106742800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr12:106736600-106751000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr12:106736800-106742000	Weak transcription	Ovary	ovary
18	chr12:106736800-106742600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr12:106736800-106745000	Weak transcription	Psoas Muscle	Psoas
20	chr12:106736800-106746600	Weak transcription	Pancreas	Pancrea
21	chr12:106736800-106751000	Weak transcription	Right Ventricle	heart
22	chr12:106737000-106742000	Weak transcription	HUVEC	blood vessel
23	chr12:106737000-106743800	Weak transcription	Aorta	Aorta
24	chr12:106737000-106751000	Weak transcription	Fetal Thymus	thymus
25	chr12:106737200-106742200	Weak transcription	Brain Anterior Caudate	brain
26	chr12:106737200-106743000	Weak transcription	Brain Angular Gyrus	brain
27	chr12:106737200-106743400	Weak transcription	NH-A	brain
28	chr12:106737200-106750800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr12:106737200-106751000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr12:106737200-106751000	Weak transcription	Fetal Lung	lung
31	chr12:106737400-106741200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr12:106737400-106741400	Weak transcription	Osteobl	bone
33	chr12:106737400-106742200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr12:106737400-106742200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr12:106737400-106742400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr12:106737400-106742400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr12:106737400-106742600	Weak transcription	NHDF-Ad	bronchial
38	chr12:106737400-106750800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr12:106737400-106750800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr12:106737400-106751000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr12:106737600-106743600	Weak transcription	HepG2	liver
42	chr12:106737600-106750800	Weak transcription	Fetal Intestine Small	intestine
43	chr12:106737600-106751000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr12:106737600-106751000	Weak transcription	Fetal Intestine Large	intestine
45	chr12:106737800-106750800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr12:106738200-106740600	Strong transcription	Thymus	Thymus
47	chr12:106738200-106741200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr12:106738400-106751000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr12:106738600-106744200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr12:106738600-106750800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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