Variant report

Variant	rs10863290
Chromosome Location	chr1:217214976-217214977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11117755	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs11117760	0.82[JPT][hapmap]
rs11581079	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs12027628	0.83[EUR][1000 genomes]
rs12035277	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs13374296	0.94[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs1339212	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4085456	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4846803	0.94[CEU][hapmap];0.87[LWK][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs7513573	0.81[JPT][hapmap]
rs7522101	0.94[CEU][hapmap];0.87[LWK][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs7527281	0.94[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1006155	chr1:217157000-217215465	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv549205	chr1:217165548-217270219	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217204800-217226000	Weak transcription	Fetal Kidney	kidney
2	chr1:217212000-217223200	Weak transcription	Gastric	stomach
3	chr1:217212600-217223000	Weak transcription	Pancreas	Pancrea
4	chr1:217212600-217224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:217213400-217215600	Weak transcription	Psoas Muscle	Psoas
6	chr1:217213400-217240600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:217214200-217216200	Enhancers	Fetal Heart	heart
8	chr1:217214400-217215000	Weak transcription	Fetal Brain Male	brain
9	chr1:217214600-217215600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:217214600-217216800	Enhancers	Fetal Muscle Leg	muscle
11	chr1:217214800-217215400	Weak transcription	Brain Anterior Caudate	brain
12	chr1:217214800-217216800	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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