Variant report

Variant	rs1339212
Chromosome Location	chr1:217217326-217217327
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10863290	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11117755	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs11581079	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs12027628	0.83[EUR][1000 genomes]
rs12035277	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs13374296	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs2818761	0.80[CEU][hapmap]
rs4085456	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4846803	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs7522101	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs7527281	0.94[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv549205	chr1:217165548-217270219	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217204800-217226000	Weak transcription	Fetal Kidney	kidney
2	chr1:217212000-217223200	Weak transcription	Gastric	stomach
3	chr1:217212600-217223000	Weak transcription	Pancreas	Pancrea
4	chr1:217212600-217224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:217213400-217240600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:217215400-217226600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:217216000-217217400	Weak transcription	Left Ventricle	heart
8	chr1:217216000-217221000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:217216600-217217400	Weak transcription	Right Atrium	heart
10	chr1:217216600-217218000	Enhancers	Fetal Heart	heart
11	chr1:217216600-217225000	Weak transcription	Right Ventricle	heart
12	chr1:217216800-217218800	Weak transcription	Fetal Muscle Leg	muscle
13	chr1:217217000-217217800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr1:217217000-217218000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr1:217217000-217226600	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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