Variant report

Variant	rs10863537
Chromosome Location	chr1:220402403-220402404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220401875..220404587-chr1:220444180..220446507,2	K562	blood:
2	chr1:220401289..220404210-chr1:220406154..220407744,2	MCF-7	breast:
3	chr1:220401657..220404587-chr1:220444540..220446507,3	K562	blood:
4	chr1:220395865..220398692-chr1:220400712..220402951,3	K562	blood:

Variant related genes	Relation type
ENSG00000118873	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11118508	0.90[CEU][hapmap];0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs12402633	0.83[ASN][1000 genomes]
rs12409065	0.85[ASN][1000 genomes]
rs12568267	0.81[ASN][1000 genomes]
rs1511695	0.83[CEU][hapmap];0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs2808009	0.83[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap]
rs2808011	0.83[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap]
rs2808018	0.82[JPT][hapmap];0.95[YRI][hapmap]
rs2808019	0.82[JPT][hapmap];0.95[YRI][hapmap]
rs2814492	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2814495	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3814345	0.81[ASN][1000 genomes]
rs4351641	0.89[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs56074233	0.84[ASN][1000 genomes]
rs6541127	0.83[AFR][1000 genomes]
rs72749210	0.84[ASN][1000 genomes]
rs7526460	0.85[ASN][1000 genomes]
rs7535619	0.83[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap]
rs7541290	0.89[CEU][hapmap];0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs7551804	0.90[CEU][hapmap];0.82[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4643	chr1:220397642-220442231	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220374600-220407600	Weak transcription	Fetal Brain Male	brain
2	chr1:220379000-220418200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:220379200-220409600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:220379200-220410800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:220379200-220422600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:220381200-220422000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:220384200-220402800	Weak transcription	NHLF	lung
8	chr1:220384200-220404400	Weak transcription	Ovary	ovary
9	chr1:220384200-220408800	Weak transcription	A549	lung
10	chr1:220384200-220420600	Weak transcription	Fetal Kidney	kidney
11	chr1:220384200-220423000	Weak transcription	Esophagus	oesophagus
12	chr1:220384200-220425800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:220384400-220413400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:220384800-220404400	Weak transcription	HSMMtube	muscle
15	chr1:220384800-220408000	Weak transcription	Hela-S3	cervix
16	chr1:220384800-220417000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr1:220385000-220403400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr1:220385000-220403800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr1:220385000-220405000	Weak transcription	Placenta	Placenta
20	chr1:220385400-220409000	Weak transcription	NH-A	brain
21	chr1:220385400-220419400	Weak transcription	HUVEC	blood vessel
22	chr1:220385600-220408000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr1:220386200-220404000	Weak transcription	NHEK	skin
24	chr1:220393000-220405400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr1:220393000-220441000	Weak transcription	NHDF-Ad	bronchial
26	chr1:220393200-220403400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr1:220393200-220408800	Weak transcription	Brain Angular Gyrus	brain
28	chr1:220393200-220413400	Weak transcription	Fetal Heart	heart
29	chr1:220393400-220403800	Weak transcription	Fetal Lung	lung
30	chr1:220393400-220404000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr1:220393400-220405000	Weak transcription	Osteobl	bone
32	chr1:220393400-220411400	Weak transcription	Fetal Brain Female	brain
33	chr1:220393800-220425800	Weak transcription	Gastric	stomach
34	chr1:220394000-220422600	Weak transcription	Thymus	Thymus
35	chr1:220394400-220407800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr1:220396600-220404400	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr1:220397200-220404400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr1:220398200-220406200	Strong transcription	Primary T cells from cord blood	blood
39	chr1:220398200-220406400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr1:220398400-220420400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:220398600-220403200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr1:220398600-220406400	Weak transcription	Brain Germinal Matrix	brain
43	chr1:220398800-220407000	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr1:220399000-220403600	Weak transcription	GM12878-XiMat	blood
45	chr1:220399000-220405400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:220399000-220405600	Weak transcription	Aorta	Aorta
47	chr1:220399000-220406200	Strong transcription	Primary B cells from cord blood	blood
48	chr1:220399000-220406800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr1:220399000-220407400	Weak transcription	Small Intestine	intestine
50	chr1:220399000-220418400	Weak transcription	H9 Cell Line	embryonic stem cell

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