Variant report

Variant	rs10863614
Chromosome Location	chr1:221615451-221615452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10863613	0.81[ASN][1000 genomes]
rs10863616	0.80[ASN][1000 genomes]
rs11118716	0.80[ASN][1000 genomes]
rs11118718	0.80[ASN][1000 genomes]
rs12081626	0.81[ASN][1000 genomes]
rs1380255	0.89[ASN][1000 genomes]
rs1551670	0.80[ASN][1000 genomes]
rs1599087	0.86[JPT][hapmap]
rs4336855	0.80[ASN][1000 genomes]
rs61817015	0.80[ASN][1000 genomes]
rs6674029	0.81[ASN][1000 genomes]
rs7539333	0.80[ASN][1000 genomes]
rs969024	0.80[ASN][1000 genomes]
rs9725646	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221611400-221615800	Enhancers	HMEC	breast
2	chr1:221612600-221615800	Enhancers	HSMMtube	muscle
3	chr1:221613400-221615600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:221613600-221615600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:221613600-221616000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr1:221613800-221615600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:221614000-221616200	Enhancers	Brain Substantia Nigra	brain
8	chr1:221614000-221616200	Enhancers	Fetal Lung	lung
9	chr1:221614200-221615600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:221614400-221615800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr1:221614800-221615600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:221614800-221615600	Enhancers	Colon Smooth Muscle	Colon
13	chr1:221614800-221615800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:221614800-221615800	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:221614800-221617800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr1:221614800-221621200	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:221615000-221617600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:221615200-221617400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr1:221615200-221617600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:221615400-221615600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:221615400-221615600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr1:221615400-221615800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links