Variant report

Variant	rs6674029
Chromosome Location	chr1:221617337-221617338
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10863613	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863614	0.81[ASN][1000 genomes]
rs10863616	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10863618	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10863620	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10863621	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118716	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118717	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11118718	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118721	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11118729	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118730	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118735	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11578091	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12081626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551670	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1599087	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1824360	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4306136	0.92[ASN][1000 genomes]
rs4308983	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4336855	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61817015	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61817017	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6696579	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6696765	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7539333	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9725646	0.90[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221614800-221617800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:221614800-221621200	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:221615000-221617600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:221615200-221617400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:221615200-221617600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:221615600-221617400	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:221615600-221635000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:221615800-221620200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:221616200-221617400	Weak transcription	Fetal Lung	lung
10	chr1:221616200-221618600	Weak transcription	Brain Substantia Nigra	brain

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