Variant report

Variant	rs10863793
Chromosome Location	chr1:210037420-210037421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210025942..210027634-chr1:210036998..210039024,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1108628	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11119357	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12022221	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1883331	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1963685	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1964106	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2049999	0.98[ASN][1000 genomes]
rs2142907	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2357231	0.83[ASN][1000 genomes]
rs4133950	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4308980	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7537070	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7537294	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7540534	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7542091	0.98[ASN][1000 genomes]
rs7548545	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7550330	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7550733	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9429825	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9429826	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210017600-210041200	Weak transcription	Fetal Brain Male	brain
2	chr1:210028200-210042400	Weak transcription	NHDF-Ad	bronchial
3	chr1:210028400-210039600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:210034000-210037600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:210034200-210037600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:210034200-210037600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:210034200-210038600	Enhancers	HMEC	breast
8	chr1:210035000-210037600	Enhancers	Brain Cingulate Gyrus	brain
9	chr1:210035400-210038000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr1:210035400-210038000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr1:210035400-210038000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:210035600-210037600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:210035800-210037600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:210035800-210037600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:210035800-210037600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr1:210035800-210038000	Enhancers	Brain Anterior Caudate	brain
17	chr1:210036000-210038000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr1:210036200-210037600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:210036200-210037600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:210036200-210037600	Enhancers	HSMMtube	muscle
21	chr1:210036200-210038000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:210036200-210038600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:210036400-210037800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr1:210036400-210038000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr1:210036400-210038000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr1:210036400-210038600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr1:210036400-210038600	Enhancers	NHEK	skin
28	chr1:210036800-210037600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr1:210036800-210037600	Enhancers	HSMM	muscle
30	chr1:210036800-210037800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr1:210036800-210037800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr1:210036800-210038400	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr1:210036800-210038600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:210037000-210037600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr1:210037000-210038000	Enhancers	NH-A	brain
36	chr1:210037000-210042400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr1:210037200-210038000	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr1:210037200-210038000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr1:210037200-210038000	Enhancers	Placenta Amnion	Placenta Amnion
40	chr1:210037200-210041800	Weak transcription	Brain Angular Gyrus	brain
41	chr1:210037200-210041800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr1:210037200-210042400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr1:210037400-210037600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr1:210037400-210037600	Enhancers	Lung	lung
45	chr1:210037400-210037600	Flanking Active TSS	Hela-S3	cervix
46	chr1:210037400-210039400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:210037400-210041800	Weak transcription	Brain Hippocampus Middle	brain
48	chr1:210037400-210042400	Weak transcription	Fetal Lung	lung

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