Variant report

Variant	rs7550733
Chromosome Location	chr1:210044968-210044969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210032919..210034879-chr1:210043076..210045650,2	K562	blood:
2	chr1:210043057..210045298-chr1:210053330..210055538,2	K562	blood:
3	chr1:210042727..210045204-chr1:210046464..210049067,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10863793	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1108628	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119357	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12022221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1883331	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1963685	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964106	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2049999	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2142907	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357231	0.82[ASN][1000 genomes]
rs4133950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4308980	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7537294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7540534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7542091	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7548545	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550330	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9429825	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9429826	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7550733	SYT14	cis	Nerve Tibial	GTEx

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210038000-210048800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:210041000-210055400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:210041800-210045200	Enhancers	Brain Angular Gyrus	brain
4	chr1:210041800-210045200	Enhancers	Brain Hippocampus Middle	brain
5	chr1:210042000-210045400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:210042200-210045600	Enhancers	Brain Cingulate Gyrus	brain
7	chr1:210042200-210046200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:210042400-210045000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:210042400-210045400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:210042400-210047800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:210042600-210046600	Enhancers	HMEC	breast
12	chr1:210042600-210049400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:210042800-210046600	Enhancers	NHEK	skin
14	chr1:210042800-210047000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:210043000-210045400	Weak transcription	NH-A	brain
16	chr1:210043200-210046400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:210044000-210046400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:210044000-210048400	Weak transcription	Brain Germinal Matrix	brain
19	chr1:210044000-210048800	Weak transcription	Fetal Brain Male	brain
20	chr1:210044400-210049000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:210044600-210046800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr1:210044600-210046800	Weak transcription	HSMMtube	muscle
23	chr1:210044600-210048800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr1:210044600-210048800	Weak transcription	Brain Substantia Nigra	brain
25	chr1:210044600-210049200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:210044800-210045200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:210044800-210046200	Weak transcription	NHDF-Ad	bronchial
28	chr1:210044800-210046600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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