Variant report

Variant	rs10864197
Chromosome Location	chr1:215950682-215950683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215938307..215941305-chr1:215949605..215951351,2	MCF-7	breast:
2	chr1:215950625..215952273-chr1:215954603..215956279,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10495005	0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11120621	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11120624	1.00[CEU][hapmap];0.90[CHD][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12141905	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12146110	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17025373	0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs17025383	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs17025389	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs17025395	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs17025414	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs17025416	1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs17025419	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs17025421	1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs17025427	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs17025432	1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1832951	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs1857229	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs2797227	0.94[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs2797228	0.94[CEU][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs2820729	0.83[CEU][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes]
rs4388678	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4655429	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4655430	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs55869451	0.92[ASN][1000 genomes]
rs59556650	0.91[ASN][1000 genomes]
rs61056565	0.98[ASN][1000 genomes]
rs61339549	0.93[ASN][1000 genomes]
rs6664811	0.87[EUR][1000 genomes]
rs6699592	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv949671	chr1:215942740-216120815	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215948600-215952400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:215949000-215951000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:215949200-215951400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:215949400-215950800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:215949400-215951200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:215949800-215950800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:215949800-215958600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:215950000-215951000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:215950000-215951000	Weak transcription	NHDF-Ad	bronchial
10	chr1:215950000-215956200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:215950200-215951200	Enhancers	HMEC	breast
12	chr1:215950200-215951400	Enhancers	NHEK	skin
13	chr1:215950200-215952200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr1:215950400-215950800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:215950600-215951200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:215950600-215951200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:215950600-215951400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:215950600-215951600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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