Variant report

Variant	rs1857229
Chromosome Location	chr1:215925938-215925939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10495005	0.85[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap]
rs10864197	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs11120621	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs11120624	0.80[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12141905	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12146110	0.90[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs12743895	1.00[AFR][1000 genomes]
rs17025333	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17025373	0.90[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs17025383	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs17025389	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs17025395	0.90[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs17025414	0.90[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap]
rs17025416	0.95[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap]
rs17025419	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs17025421	0.95[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap]
rs17025427	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs17025432	0.95[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap]
rs4655429	0.90[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs4655430	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs55869451	0.81[ASN][1000 genomes]
rs59556650	0.83[ASN][1000 genomes]
rs61339549	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv549190	chr1:215903837-215928483	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv468116	chr1:215922860-215947408	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv549191	chr1:215922860-215947408	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links