Variant report

Variant	rs10865124
Chromosome Location	chr2:37576553-37576554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37571184..37574506-chr2:37575236..37577117,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115828	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10179447	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10196818	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11124581	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372998	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2372999	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3770751	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770755	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3770756	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3821142	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670692	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6708524	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7600995	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10865124	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37572400-37576600	Weak transcription	Spleen	Spleen
2	chr2:37572600-37576600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:37572600-37576600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:37572600-37576600	Weak transcription	Fetal Kidney	kidney
5	chr2:37572600-37576600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr2:37572600-37576800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:37572600-37576800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:37572600-37577200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:37572600-37577200	Weak transcription	Liver	Liver
10	chr2:37572600-37577200	Weak transcription	Fetal Intestine Large	intestine
11	chr2:37572600-37577200	Weak transcription	Left Ventricle	heart
12	chr2:37572600-37595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:37572800-37576800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr2:37572800-37576800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:37572800-37577200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:37572800-37577200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr2:37572800-37577200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr2:37572800-37577200	Weak transcription	Right Atrium	heart
19	chr2:37572800-37577200	Weak transcription	HMEC	breast
20	chr2:37572800-37577200	Weak transcription	Osteobl	bone
21	chr2:37572800-37577600	Weak transcription	NHEK	skin
22	chr2:37573200-37577000	Weak transcription	Adipose Nuclei	Adipose
23	chr2:37573400-37576600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:37573400-37577600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr2:37573600-37578800	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr2:37575000-37578600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr2:37575200-37577000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:37575200-37577400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr2:37575200-37577400	Enhancers	HSMMtube	muscle
30	chr2:37575200-37577600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr2:37575200-37577800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr2:37575200-37578400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:37575200-37578600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr2:37575400-37577200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr2:37575400-37577800	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr2:37575600-37577200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr2:37575600-37577600	Enhancers	H1 Cell Line	embryonic stem cell
38	chr2:37575600-37578000	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr2:37575800-37576800	Enhancers	H9 Cell Line	embryonic stem cell
40	chr2:37575800-37576800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr2:37575800-37577800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr2:37576000-37576800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:37576000-37576800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr2:37576000-37577200	Weak transcription	Fetal Lung	lung
45	chr2:37576000-37577200	Enhancers	A549	lung
46	chr2:37576000-37577400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr2:37576000-37577800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr2:37576000-37578200	Enhancers	Primary B cells from peripheral blood	blood
49	chr2:37576000-37578600	Enhancers	NHDF-Ad	bronchial
50	chr2:37576000-37578800	Enhancers	Colon Smooth Muscle	Colon

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