Variant report

Variant	rs4670692
Chromosome Location	chr2:37573246-37573247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37558808..37561496-chr2:37570984..37573398,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207364	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10179447	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10196818	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10865124	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11124581	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2270331	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2372998	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372999	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3770751	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3770755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770756	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821142	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6708524	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7600995	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37571600-37574600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:37572200-37573800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:37572400-37573600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
4	chr2:37572400-37574400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:37572400-37576000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:37572400-37576200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:37572400-37576600	Weak transcription	Spleen	Spleen
8	chr2:37572600-37573400	Enhancers	Primary B cells from peripheral blood	blood
9	chr2:37572600-37575600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:37572600-37575800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:37572600-37575800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:37572600-37576600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:37572600-37576600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:37572600-37576600	Weak transcription	Fetal Kidney	kidney
15	chr2:37572600-37576600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:37572600-37576800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:37572600-37576800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:37572600-37577200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:37572600-37577200	Weak transcription	Liver	Liver
20	chr2:37572600-37577200	Weak transcription	Fetal Intestine Large	intestine
21	chr2:37572600-37577200	Weak transcription	Left Ventricle	heart
22	chr2:37572600-37595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr2:37572800-37573400	Active TSS	Primary hematopoietic stem cells	blood
24	chr2:37572800-37573400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr2:37572800-37573400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:37572800-37573400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:37572800-37573400	Enhancers	Duodenum Mucosa	Duodenum
28	chr2:37572800-37573600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr2:37572800-37575000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr2:37572800-37575200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr2:37572800-37575200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr2:37572800-37575200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr2:37572800-37575200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr2:37572800-37576000	Weak transcription	Colon Smooth Muscle	Colon
35	chr2:37572800-37576000	Weak transcription	A549	lung
36	chr2:37572800-37576000	Weak transcription	NHDF-Ad	bronchial
37	chr2:37572800-37576200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:37572800-37576800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr2:37572800-37576800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr2:37572800-37577200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr2:37572800-37577200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr2:37572800-37577200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr2:37572800-37577200	Weak transcription	Right Atrium	heart
44	chr2:37572800-37577200	Weak transcription	HMEC	breast
45	chr2:37572800-37577200	Weak transcription	Osteobl	bone
46	chr2:37572800-37577600	Weak transcription	NHEK	skin
47	chr2:37573000-37573800	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr2:37573000-37574200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr2:37573200-37573400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
50	chr2:37573200-37573600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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