Variant report

Variant	rs10865435
Chromosome Location	chr3:21598141-21598142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10168482	0.80[ASN][1000 genomes]
rs10168538	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10169340	0.82[ASN][1000 genomes]
rs10172554	0.81[EUR][1000 genomes]
rs10172579	0.81[ASN][1000 genomes]
rs10172887	0.81[EUR][1000 genomes]
rs10182282	0.80[ASN][1000 genomes]
rs10185733	0.81[ASN][1000 genomes]
rs10192746	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10197523	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1040179	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10865434	0.83[ASN][1000 genomes]
rs10865437	0.80[ASN][1000 genomes]
rs11126672	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12618229	0.80[ASN][1000 genomes]
rs12713965	0.80[ASN][1000 genomes]
rs13014178	0.84[ASN][1000 genomes]
rs13385712	0.83[ASN][1000 genomes]
rs13389026	0.81[ASN][1000 genomes]
rs13429424	0.80[ASN][1000 genomes]
rs1378427	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1378428	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1400133	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1400134	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1455385	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1516250	0.81[ASN][1000 genomes]
rs1516251	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1521501	0.80[ASN][1000 genomes]
rs1521502	0.80[ASN][1000 genomes]
rs1521503	0.80[ASN][1000 genomes]
rs1521504	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1543141	0.82[ASN][1000 genomes]
rs1568062	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1598356	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1902193	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1964767	0.82[ASN][1000 genomes]
rs2009237	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2010470	0.82[ASN][1000 genomes]
rs2198677	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2203582	0.82[ASN][1000 genomes]
rs2861610	0.81[EUR][1000 genomes]
rs2861611	0.81[EUR][1000 genomes]
rs2861613	0.84[ASN][1000 genomes]
rs35011092	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4303736	0.83[ASN][1000 genomes]
rs4488689	0.80[ASN][1000 genomes]
rs4629185	0.82[ASN][1000 genomes]
rs4641962	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4853394	0.84[ASN][1000 genomes]
rs4853400	0.81[ASN][1000 genomes]
rs55642354	0.83[ASN][1000 genomes]
rs6716656	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6717285	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6718074	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6729135	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6740971	0.80[ASN][1000 genomes]
rs6750382	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6757441	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7571685	0.81[EUR][1000 genomes]
rs7580922	0.82[ASN][1000 genomes]
rs7592122	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7598502	0.81[ASN][1000 genomes]
rs932141	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426590	chr3:21593997-21613071	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21574000-21602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:21585000-21601600	Weak transcription	Fetal Stomach	stomach
3	chr3:21585800-21602000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:21588600-21603200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:21588600-21604600	Weak transcription	Aorta	Aorta
6	chr3:21593000-21606800	Weak transcription	K562	blood
7	chr3:21596400-21606800	Weak transcription	Psoas Muscle	Psoas

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